Carole Goble

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Publications

Journal Articles

[1] M. Bada, R. Stevens, C. A. Goble, Y. Gil, M. Ashburner, J. A. Blake, J. M. Cherry, M. Harris, and S. Lewis, "A Short Study on the Success of the Gene Ontology," Journal of Web Semantics, vol. 1, 2004.

[2] P. G. Baker, C. A. Goble, S. Bechhofer, N. W. Paton, R. Stevens, and A. Brass, "An Ontology for Bioinformatics Applications," Bioinformatics, vol. 15, pp. 510-520, 1999.

[3] S. Bechhofer and C. A. Goble, "Delivering terminological services," Journal of the Italian Association for AI AI*IA Notizie, special issue on Description Logics for Engineering Applications, vol. 12, pp. 27-32, 1999.

[4] S. Bechhofer and C. A. Goble, "Thesaurus Construction through Knowledge Representation," Data and Knowledge Engineering, vol. 37, pp. 25-45, 2001.

[5] L. Chen, N. Shadbolt, C. Goble, F. Tao, C. Puleston, and S. J. Cox, "Semantics-Assisted Problem Solving on the Semantic Grid," Computational Intelligence, vol. 21, pp. 157-176, 2005.

[6] L. Chen, N. R. Shadbolt, F. Tao, and C. Goble, "Engineering Grid Resources' Metadata for Resource and Knowledge Sharing," International Journal of Web Service Research, 2005.

[7] O. Corcho, P. Alper, I. Kotsiopoulos, P. Missier, S. Bechhofer, and C. Goble, "S-OGSA: a Reference Semantic Grid Architecture," Elsevier Journal Web Semantics, Special Section on Semantic Grid: Semantic Grid - The Convergence of Technologies (guest eds York Sure and David De Roure), vol. 4, pp. 81-154, 2006.

[8] C. A. Goble, R. Stevens, G. Ng, S. Bechhofer, N. W. Paton, P. G. Baker, M. Peim, and A. Brass, "Transparent Access to Multiple Bioinformatics Information Sources," IBM Systems Journal Special issue on deep computing for the life sciences, vol. 40, pp. 532-551, 2001.

[9] S. Harper, C. Goble, and S. Pettitt, "proximity: Walking the link," Journal of Digital Information (JODI), vol. 5, 2004.

[10] S. Harper, C. Goble, and R. Stevens, "Augmenting the Mobility of Visually Impaired Web Travellers," New Review of Hypermedia and Multimedia, 2005.

[11] S. Harper, S. Pettitt, and C. A. Goble, "Sentinel: Towards an Ambient Mobility Network," Journal of Disability and Rehabilitation, vol. 25, pp. 940-8, 2003.

[12] S. Harper, R. D. Stevens, and C. A. Goble, "Web Mobility Guidelines for Visually Impaired Surfers," Journal of Research and Practice in Information Technology Special Issue on HCI, vol. 33, pp. 30–41, 2001.

[13] D. Hull, K. Wolstencroft, R. Stevens, C. Goble, M. Pocock, P. Li, T. Oinn, N. Zhang, L. Yao, A. Nenadic, J. Chin, C. Goble, A. Rector, D. Chadwick, S. Otenko, and Q. Shi, "Taverna: a tool for building and running workflows of services Achieving Fine-grained Access Control in Virtual Organisations," Nucleic Acids Research, 2006.

[14] P. W. Lord, R. D. Stevens, A. Brass, and C. A. Goble, "Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation," Bioinformatics, vol. 19, pp. 1275-83, 2003.

[15] N. Murray, C. A. Goble, and N. W. Paton, "A Framework for Describing Visual Interfaces to Databases," Journal of Visual Languages and Computing, vol. 9, pp. 429-456, 1998.

[16] N. Murray, N. W. Paton, C. A. Goble, and J. Bryce, "Kaleidoquery: a flow-based visual language and its evaluation," Journal of Visual Languages and Computing, 2000.

[17] A. Nenadic, N. Zhang, B. Cheetham, and C. Goble, "Certified Delivery of E-goods Using Verifiable and Recoverable Signature Encryption," Journal of Universal Computer Science, vol. 11, pp. 175-192, 2005.

[18] M. H. O'Docherty, C. N. Daskalakis, P. J. Crowther, C. A. Goble, M. A. Ireton, J. Oakley, C. S. Xydeas, and Netherlands, "The Design and Implementation of a Multimedia Information System with Automatic Content Retrieval," Information Services & Use, vol. 11, pp. 345-385, 1991.

[19] T. Oinn, M. Greenwood, M. Addis, M. A. Nedim, J. Ferris, K. Glover, C. Goble, D. Hull, D. Marvin, P. Li, P. Lord, M. P. R, M. Senger, R. Stevens, A. Wipat, and C. Wroe, "Taverna: Lessons in creating a workflow environment for the life sciences," Concurrency and Computation: Practice and Engineering, vol. 18, pp. 1067-1100, 2006.

[20] N. W. Paton, C. A. Goble, and S. Bechhofer, "Knowledge Based Information Integration Systems," Information and Software Technology, vol. 42, pp. 299-312, 2000.

[21] N. W. Paton, S. A. Khan, A. Hayes, F. Moussouni, A. Brass, K. Eilbeck, C. A. Goble, S. Hubbard, and S. G. Oliver, "Conceptual Modelling of Genomic Information," Bioinformatics, vol. 16, pp. 548-558, 2000.

[22] A. L. Rector, S. Bechhofer, C. A. Goble, I. Horrocks, W. A. Nowlan, and W. D. Solomon, "The GRAIL Concept Modelling Language for Medical Terminology," Journal of Artificial Intelligence in Medicine, vol. 9, pp. 139-171, 1997.

[23] A. L. Rector, W. A. Nowlan, S. Kay, C. A. Goble, and H. J. T, "A Framework for Modelling the Electronic Medical Record," Methods of Information in Medicine, 2/93, vol. 32, pp. 109-119, 1993.

[24] J. R. Reich, A. Mitchell, C. A. Goble, and T. K. Attwood, "Toward more intelligent annotation tools: a prototype," IEEE Intelligent Systems special issue on Intelligent Biology, vol. 16, pp. 42-51, 2001.

[25] M. Sabou, C. Wroe, C. Goble, and H. Stuckenschmidt, "Learning Domain Ontologies for Semantic Web Service Descriptions," Journal of Web Semantics, vol. 3, 2005.

[26] R. Stevens, C. A. Goble, I. Horrocks, and S. Bechhofer, "Building a Bioinformatics Ontology Using OIL IEEE Information Technology," Biomedicine special issue on Bioinformatics, vol. 6, pp. 135-141, 2002.

[27] R. Stevens, C. A. Goble, I. Horrocks, and S. Bechhofer, "OILing the way to Machine Understandable Bioinformatics Resources," IEEE Information Technology in Biomedicine special issue on Bioinformatics., vol. 6, pp. 129-134, 2002.

[28] R. Stevens, C. Wroe, S. Bechhofer, P. Lord, A. Rector, and C. Goble, "Building Ontologies in DAML + OIL," Comparative and Functional Genomics, vol. 4, 2003.

[29] R. D. Stevens, S. Bechhofer, and C. A. Goble, "Ontology-based Knowledge Representation for Bioinformatics," Briefings in Bioinformatics, vol. 1, 2000.

[30] R. D. Stevens, C. A. Goble, P. Baker, and A. Brass, "A Classification of Tasks in Bioinformatics," Bioinformatics, vol. 17, pp. 180-188, 2001.

[31] C. Wroe, C. Goble, A. Goderis, P. Lord, S. Miles, J. Papay, P. Alper, and L. Moreau, "Recycling workflows and services through discovery and reuse," Concurrency and Computation: Practice and Engineering, vol. 19, pp. 181-194, 2007.

[32] C. Wroe, C. A. Goble, M. Greenwood, P. Lord, S. Miles, J. Papay, T. Payne, and L. Moreau, "Automating Experiments Using Semantic Data on a Bioinformatics Grid," IEEE Intelligent Systems special issue on e-Science, 2004.

[33] C. Wroe, R. D. Stevens, C. A. Goble, A. Roberts, and M. Greenwood, "A suite of DAML+OIL ontologies to describe bioinformatics web services and data," International Journal of Cooperative Information Systems. special issue on Bioinformatics and Biological Data Management, vol. 12, pp. 197-224, 2003.

Conference papers since 2001

[1] A. Goderis, P. Li, and C. Goble, "Workflow discovery: the problem, a case study from e-Science and a graph-based solution," presented at Proc 4th IEEE Int. Conference on Web Services (ICWS 2006), Chicago, USA, 2006.

[2] J. Zhao, C. Goble, and R. Stevens, "An Identity Crisis in the Life Sciences," presented at 1st International Provenance and Annotation Workshop (IPAW'06), Chicago, 2006.

[3] A. Goderis, C. Goble, U. Sattler, and P. Lord, "Seven Bottlenecks to Workflow Reuse and Repurposing," presented at 4th International Semantic Web Conference, Galway, Ireland, 2005.

[4] P. Fraternali, P. Plessers, S. Casteleyn, Y. Yesilada, O. T. De, R. Stevens, S. Harper, and C. Goble, "Accessibility: A Web Engineering Approach," presented at Proc 17th Intl Conference on World Wide Web WWW2005, Japan, 2005.

[5] M. Sabou, C. Wroe, C. Goble, and G. Mishne, "Learning Domain Ontologies for Web Service Descriptions: an Experiment in Bioinformatics," presented at Proc 17th Intl Conference on World Wide Web WWW2005, Japan, 2005.

[6] K. Garwood, P. Lord, H. Parkinson, N. P. W, and C. Goble, "Pedro Ontology Services: A framework for rapid ontology markup," presented at Proc of 2nd European Semantic Web Conference, Crete, 2005.

[7] P. Lord, P. Alper, C. Wroe, and C. Goble, "Feta: A light-weight architecture for user oriented semantic service discovery," presented at Proc of 2nd European Semantic Web Conference, Crete, 2005.

[8] J. Zhao, C. Wroe, C. Goble, R. Stevens, D. Quan, and M. Greenwood, "Using Semantic Web Technologies for Representing e-Science Provenance," presented at Proc 3rd International Semantic Web Conference ISWC2004, Hiroshima, Japan, 2004.

[9] P. Lord, S. Bechhofer, M. Wilkinson, G. Schiltz, D. Gessler, C. Goble, L. Stein, and D. Hull, "Applying semantic web services to bioinformatics: Experiences gained, lessons learnt," presented at Proc 3rd International Semantic Web Conference ISWC2004, Hiroshima, Japan, 2004.

[10] Y. Yesilada, R. Stevens, C. Goble, and S. Hussein, "Rendering Tables in Audio: The Interaction of Structure and Reading Styles," presented at The Sixth International ACM SIGCAPH Conference on Assistive Technologies (ASSETS), Atlanta, USA, 2004.

[11] S. Harper, C. Goble, R. Stevens, and Y. Yesilada, "Middleware to Expand Context and Preview in Hypertext," presented at Proceedings of the ACM SIGACCESS Conference on Computers and Accessibility, 2004.

[12] R. Stevens, H. T. J, C. Wroe, T. Oinn, M. Senger, P. Lord, C. G. A, A. Brass, and M. Tassabehji, "Exploring Williams-Beuren Syndrome Using myGrid," presented at Proc of 12th Intelligent Systems in Molecular Biology (ISMB), Glasgow, UK, 2004.

[13] S. Harper, Y. Yesilada, C. Goble, and R. Stevens, "How Much is Too Much in Hypertext Links," presented at Fifteenth ACM Conference on Hypertext and Hypermedia, Santa Cruz, USA, 2004.

[14] L. Chen, S. J. Cox, F. Tao, N. R. Shadbolt, C. Puleston, and C. Goble, "Empowering Resource Providers to Build the Semantic Grid," presented at Proceedings of the IEEE/WIC/ACM International Conference on Web Intelligence (WI04), Beijing, China, 2004.

[15] Y. Yesilada, S. Harper, C. Goble, and R. Stevens, "Screen Readers Cannot See (Ontology Based Semantic Annotation for Visually Impaired Web Travellers)," presented at International Conference on Web Engineering (ICWE), Munich, Germany, 2004.

[16] S. Harper, S. Pettitt, and C. Goble, "Proximity: Ad-hoc networks for enhanced mobility

Computers Helping People with Special Needs Lecture Notes in Computer Science vol. 3118," presented at 9th International Conference, ICCHP, Paris, France, 2004.

[17] J. Zhao, C. Goble, R. Stevens, and S. Bechhofer, "Semantically Linking and Browsing Provenance Logs for e-Science," presented at International Conference on Semantics of a Networked World Revised Selected papers, Paris, France, 2004.

[18] J. Brooke, D. Fellows, K. Garwood, and C. Goble, "Semantic matching of Grid Resource Descriptions," presented at Proceedings of Second European Across Grids Conference (AXGrids 2004), Nicosia, Cyprus, 2004.

[19] S. Harper, C. Goble, and R. Stevens, "Traversing the web: Mobility heuristics for visually impaired surfers," presented at Proceedings of the Fourth International Conference on Web Information Systems Engineering (WISE03), Los Alamitos California, USA, 1012.

[20] L. Chen, N. R. Shadbolt, C. A. Goble, F. Tao, S. J. Cox, C. Puleston, and P. R. Smart, "Towards a Knowledge-based Approach to Semantic Service Composition," presented at 2nd International Semantic Web Conference, Sanibel Island, Florida, USA, 2003.

[21] S. Harper, C. A. Goble, and S. Pettitt, "Sentinel: Universal Access to Ambient Devices," presented at Proceedings of the 10th International Conference on Human-Computer Interaction, 2003.

[22] S. Harper, C. Goble, and S. Pettitt, "Sentinel: Universal access to ambient devices," presented at Proceedings of the 10th International Conference on Human-Computer Interaction, London, UK, 2003.

[23] Y. Yesilada, S. Harper, C. Goble, and R. Stevens, "Ontology Based Semantic Annotation for Enhancing Mobility Support for Visually Impaired Web Users," presented at Proc. of the K-CAP 2003 Workshop on Knowledge Markup and Semantic Annotation, Florida, USA, 2003.

[24] R. Stevens, A. Robinson, and C. A. Goble, "myGrid: Personalised Bioinformatics on the Information Grid," presented at Proceedings of 11th International Conference on Intelligent Systems in Molecular Biology, Brisbane, Australia, 2003.

[25] Y. Yesilada, R. Stevens, and C. Goble, "A Foundation for Tool Based Mobility Support for Visually Impaired Web Users," presented at Proc. of the Twelfth International World Wide Web Conference (WWW 2003) C Budapest, Hungary, 2003.

[26] C. J. Wroe, R. D. Stevens, C. A. Goble, and M. Ashburner, "A Methodology To Migrate The Gene Ontology To A Description Logic Environment Using DAML+OIL," presented at Proceedings of the 8th Pacific Symposium on Biocomputing (PSB), Hawaii, 2003.

[27] P. W. Lord, R. D. Stevens, A. Brass, and C. A. Goble, "Semantic similarity measures as tools for exploring the Gene Ontology," presented at Proceedings of the 8th Pacific Symposium on Biocomputing (PSB), Hawaii, 2003.

[28] L. Moreau, S. Miles, C. Goble, M. Greenwood, V. Dialani, M. Addis, N. Alpdemir, R. Cawley, D. De Roure, J. Ferris, R. Gaizauskas, K. Glover, C. Greenhalgh, M. Greenwood, P. Li, X. Liu, P. Lord, M. Luck, D. Marvin, T. Oinn, N. Paton, S. Pettifer, M. R. V, A. Roberts, A. Robinson, T. Rodden, M. Senger, N. Sharman, R. Stevens, B. Warboys, P. Watson, and C. Wroe, "On the Use of Agents in a BioInformatics Grid," presented at Network Tools and Applications in Biology (NETTAB'2002) - Agents in Bioinformatics, Bologna, Italy, 2002.

[29] L. Chen, S. Cox, C. A. Goble, A. Keane, A. Roberts, N. R. Shadbolt, P. Smart, F. Tao, M. Greenwood, C. S. R. D. Wroe, C. A. Goble, and M. Addis, "Engineering Knowledge for Engineering Grid Applications

Are bioinformaticians doing e-Business?," presented at Proceedings EuroWeb 2002 The Web and the GRID: from e-science to e-business, Oxford, UK

Oxford, UK, 2002.

[30] M. Peim, E. Franconi, N. W. Paton, and C. A. Goble, "Query Processing with Description Logic Ontologies Over Object-Wrapped Databases," presented at 14th International Conference on Scientific and Statistical Database Management SSDBM 2002, Edinburgh, Scotland, 2002.

[31] S. Bechhofer, L. Carr, C. A. Goble, S. Kampa, and T. Miles-Board, "The Semantics of Semantic Annotation," presented at ODBASE2002: First International Conference on Ontologies, Databases, and Applications of Semantics for Large Scale Information Systems, Irvine, California, 2002.

[32] R. D. Stevens, I. Horrocks, C. A. Goble, and S. Bechhofer, "Building a Reason-able Bioinformatics Ontology Using OIL," presented at IJCAI'01 Workshop on Ontologies and Information Sharing, Seattle, USA, 2001.

[33] S. Bechhofer, I. Horrocks, C. A. Goble, and R. D. Stevens, "OilEd: a Reason-able Ontology Editor for the Semantic Web," presented at Proceedings of KI2001, Joint German/Austrian conference on Artificial Intelligence, Vienna, 2001.

[34] S. Bechhofer and C. A. Goble, "Towards Annotation using DAML+OIL," presented at K-CAP 2001 Workshop on Knowledge Markup and Semantic Annotation, Victoria B.C, 2001.

[35] L. Carr, S. Bechhofer, C. A. Goble, and W. Hall, "Conceptual Linking: Ontology-based Open Hypermedia," presented at WWW10, Tenth World Wide Web Conference, Hong Kong, 2001.

[36] P. W. Lord, J. R. Reich, A. Mitchell, R. D. Stevens, T. K. Attwood, and C. A. Goble, "PRECIS: An automated pipeline for producing concise reports about proteins," presented at IEEE International Symposium on Bio-informatics and Biomedical engineering, Washington DC, 2001.

[37] S. Harper, C. A. Goble, and R. D. Stevens, "Prototype Mobility Tools for Visually Impaired Surfers," presented at Proceedings of the 12th ACM Conference on Hypertext and Hypermedia 2001, Aarhus, Denmark, 2001.

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